IL_9BUP_197
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 9BUP|1|SA|C|1375, 9BUP|1|SA|U|1678, 9BUP|1|SA|G|1681
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_197 not in the Motif Atlas
- Geometric match to IL_8P9A_439
- Geometric discrepancy: 0.1752
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
9BUP|1|SA|U|1373
9BUP|1|SA|G|1374
9BUP|1|SA|C|1375
9BUP|1|SA|A|1376
9BUP|1|SA|U|1377
9BUP|1|SA|G|1378
9BUP|1|SA|G|1379
*
9BUP|1|SA|U|1676
9BUP|1|SA|C|1677
9BUP|1|SA|U|1678
9BUP|1|SA|G|1679
9BUP|1|SA|U|1680
9BUP|1|SA|G|1681
9BUP|1|SA|A|1682
9BUP|1|SA|U|1683
9BUP|1|SA|G|1684
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain S9
- Transfer RNA; tRNA
- Chain SD
- 40S ribosomal protein S3
- Chain SN
- 40S ribosomal protein S20e
- Chain SO
- 40S ribosomal protein S10
- Chain ST
- 40S ribosomal protein S29
- Chain mR
- mRNA
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