IL_9BUP_220

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAG*UCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_220 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.2013

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

9BUP|1|SA|C|1979
9BUP|1|SA|A|1980
9BUP|1|SA|A|1981
9BUP|1|SA|G|1982
*
9BUP|1|SA|U|2008
9BUP|1|SA|C|2009
9BUP|1|SA|U|2010
9BUP|1|SA|G|2011

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain SH

40S ribosomal protein S6