IL_9C3H_079

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

9C3H|1|L5|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_079 not in the Motif Atlas

Homologous match to IL_8C3A_057

Geometric discrepancy: 0.2612

The information below is about IL_8C3A_057

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

9C3H|1|L5|U|1957
9C3H|1|L5|A|1958
9C3H|1|L5|U|1959
9C3H|1|L5|A|1960
9C3H|1|L5|G|1961
9C3H|1|L5|A|1962
9C3H|1|L5|C|1963
9C3H|1|L5|A|1964
9C3H|1|L5|G|1965
*
9C3H|1|L5|C|2022
9C3H|1|L5|C|2023
9C3H|1|L5|G|2024
9C3H|1|L5|A|2025
9C3H|1|L5|A|2026

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lo

Large ribosomal subunit protein eL40