IL_9C3H_085

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GUAGU(A2M)(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_085 not in the Motif Atlas

Homologous match to IL_8P9A_289

Geometric discrepancy: 0.0686

The information below is about IL_8P9A_289

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9C3H|1|L5|G|2358
9C3H|1|L5|U|2359
9C3H|1|L5|A|2360
9C3H|1|L5|G|2361
9C3H|1|L5|U|2362
9C3H|1|L5|A2M|2363
9C3H|1|L5|OMG|2364
*
9C3H|1|L5|C|3858
9C3H|1|L5|G|3859
9C3H|1|L5|A|3860
9C3H|1|L5|A|3861
9C3H|1|L5|A|3862
9C3H|1|L5|C|3863

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L1

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

Large ribosomal subunit protein uL4

Chain Lh

Large ribosomal subunit protein uL22

Chain NC

Nascent chain