IL_9C3H_087

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

(OMU)GAAC*GAA

Length

8 nucleotides

Bulged bases

9C3H|1|L5|A|2428

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_087 not in the Motif Atlas

Homologous match to IL_8C3A_482

Geometric discrepancy: 0.3505

The information below is about IL_8C3A_482

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_04395.1

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

3

Unit IDs

9C3H|1|L5|OMU|2415
9C3H|1|L5|G|2416
9C3H|1|L5|A|2417
9C3H|1|L5|A|2418
9C3H|1|L5|C|2419
*
9C3H|1|L5|G|2427
9C3H|1|L5|A|2428
9C3H|1|L5|A|2429

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

Large ribosomal subunit protein eL19

Chain LU

Large ribosomal subunit protein eL39

Chain Lh

Large ribosomal subunit protein uL22

Chain NC

Nascent chain