IL_9C3H_109
3D structure
- PDB id
- 9C3H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2 Å
Loop
- Sequence
- CGAAGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 9C3H|1|L5|A|3663, 9C3H|1|L5|U|3679, 9C3H|1|L5|C|3683
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9C3H_109 not in the Motif Atlas
- Homologous match to IL_8C3A_088
- Geometric discrepancy: 0.0784
- The information below is about IL_8C3A_088
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_64509.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
9C3H|1|L5|C|3660
9C3H|1|L5|G|3661
9C3H|1|L5|A|3662
9C3H|1|L5|A|3663
9C3H|1|L5|G|3664
9C3H|1|L5|G|3665
*
9C3H|1|L5|U|3677
9C3H|1|L5|G|3678
9C3H|1|L5|U|3679
9C3H|1|L5|U|3680
9C3H|1|L5|G|3681
9C3H|1|L5|A|3682
9C3H|1|L5|C|3683
9C3H|1|L5|G|3684
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LD
- Large ribosomal subunit protein uL2
- Chain Lp
- Large ribosomal subunit protein eL43
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
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