IL_9C3H_127
3D structure
- PDB id
- 9C3H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2 Å
Loop
- Sequence
- U(PSU)GA*(PSU)ACA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9C3H_127 not in the Motif Atlas
- Homologous match to IL_8P9A_327
- Geometric discrepancy: 0.2643
- The information below is about IL_8P9A_327
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
9C3H|1|L5|U|4295
9C3H|1|L5|PSU|4296
9C3H|1|L5|G|4297
9C3H|1|L5|A|4298
*
9C3H|1|L5|PSU|4312
9C3H|1|L5|A|4313
9C3H|1|L5|C|4314
9C3H|1|L5|A|4315
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L8
- Large ribosomal subunit protein uL18
- Chain LT
- Large ribosomal subunit protein eL21
- Chain Lb
- Large ribosomal subunit protein eL29
- Chain Le
- Large ribosomal subunit protein eL42
- Chain Lj
- Large ribosomal subunit protein eL18
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