IL_9C3H_147

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

UGUA(PSU)(OMG)*CGAAG

Length

11 nucleotides

Bulged bases

9C3H|1|L5|U|4634, 9C3H|1|L5|PSU|4636

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_147 not in the Motif Atlas

Homologous match to IL_8C3A_127

Geometric discrepancy: 0.2754

The information below is about IL_8C3A_127

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

9C3H|1|L5|U|4632
9C3H|1|L5|G|4633
9C3H|1|L5|U|4634
9C3H|1|L5|A|4635
9C3H|1|L5|PSU|4636
9C3H|1|L5|OMG|4637
*
9C3H|1|L5|C|4662
9C3H|1|L5|G|4663
9C3H|1|L5|A|4664
9C3H|1|L5|A|4665
9C3H|1|L5|G|4666

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LW

Large ribosomal subunit protein eL24

Chain Ld

Large ribosomal subunit protein eL31