IL_9CPA_031

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CPA_031 not in the Motif Atlas

Geometric match to IL_8P9A_402

Geometric discrepancy: 0.1368

The information below is about IL_8P9A_402

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

9CPA|1|2|A|589
9CPA|1|2|G|590
9CPA|1|2|G|591
9CPA|1|2|G|592
9CPA|1|2|C|593
9CPA|1|2|A|594
9CPA|1|2|A|595
9CPA|1|2|G|596
*
9CPA|1|2|C|626
9CPA|1|2|U|627

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein uS5

Chain L

Ribosomal protein S9 (Predicted)

Chain i

40S ribosomal protein S30