IL_9CPA_037
3D structure
- PDB id
- 9CPA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9CPA_037 not in the Motif Atlas
- Geometric match to IL_8P9A_407
- Geometric discrepancy: 0.0914
- The information below is about IL_8P9A_407
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_05821.1
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
9CPA|1|2|C|666
9CPA|1|2|G|667
9CPA|1|2|U|668
9CPA|1|2|A|669
9CPA|1|2|G|670
*
9CPA|1|2|U|1021
9CPA|1|2|C|1022
9CPA|1|2|A|1023
9CPA|1|2|A|1024
9CPA|1|2|G|1025
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain N
- Ribosomal protein S11
- Chain P
- Ribosomal protein S13
- Chain Y
- Ribosomal protein S15a
- Chain Z
- uS12
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