IL_9CPA_053

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CPA_053 not in the Motif Atlas

Geometric match to IL_8P9A_421

Geometric discrepancy: 0.1379

The information below is about IL_8P9A_421

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

9CPA|1|2|G|938
9CPA|1|2|U|939
9CPA|1|2|A|940
9CPA|1|2|U|941
*
9CPA|1|2|A|977
9CPA|1|2|G|978
9CPA|1|2|A|979
9CPA|1|2|C|980

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 0

Small ribosomal subunit protein uS11

Chain b

40S ribosomal protein S26

Chain x

Small ribosomal subunit protein eS1