IL_9D89_013
3D structure
- PDB id
- 9D89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- CCU*AUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9D89_013 not in the Motif Atlas
- Homologous match to IL_5J7L_257
- Geometric discrepancy: 0.0377
- The information below is about IL_5J7L_257
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_07785.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
9D89|1|D|C|566
9D89|1|D|C|567
9D89|1|D|U|568
*
9D89|1|D|A|577
9D89|1|D|U|578
9D89|1|D|G|579
Current chains
- Chain D
- 23S rRNA
Nearby chains
- Chain H
- 50S ribosomal protein L4
- Chain I
- 50S ribosomal protein L15
- Chain M
- 50S ribosomal protein L32
- Chain p
- Large ribosomal subunit protein bL20
- Chain q
- 50S ribosomal protein L21
Coloring options: