IL_9D89_035

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

9D89|1|D|A|1145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D89_035 not in the Motif Atlas

Homologous match to IL_5J7L_280

Geometric discrepancy: 0.0442

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

9D89|1|D|U|1020
9D89|1|D|U|1021
9D89|1|D|A|1022
9D89|1|D|A|1023
9D89|1|D|G|1024
9D89|1|D|U|1025
9D89|1|D|G|1026
*
9D89|1|D|C|1142
9D89|1|D|U|1143
9D89|1|D|A|1144
9D89|1|D|A|1145
9D89|1|D|A|1146

Current chains

Chain D

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L36

Chain i

Large ribosomal subunit protein uL13