IL_9D89_037
3D structure
- PDB id
- 9D89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- GAUG*CGC
- Length
- 7 nucleotides
- Bulged bases
- 9D89|1|D|U|1035
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9D89_037 not in the Motif Atlas
- Homologous match to IL_5J7L_282
- Geometric discrepancy: 0.079
- The information below is about IL_5J7L_282
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_57744.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
9D89|1|D|G|1033
9D89|1|D|A|1034
9D89|1|D|U|1035
9D89|1|D|G|1036
*
9D89|1|D|C|1123
9D89|1|D|G|1124
9D89|1|D|C|1125
Current chains
- Chain D
- 23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L36
- Chain E
- 5S ribosomal RNA; 5S rRNA
- Chain l
- 50S ribosomal protein L16
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