IL_9D89_066
3D structure
- PDB id
- 9D89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- UGCAAAC*GGACGUAUA
- Length
- 16 nucleotides
- Bulged bases
- 9D89|1|D|A|1803, 9D89|1|D|C|1818, 9D89|1|D|U|1822
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9D89_066 not in the Motif Atlas
- Homologous match to IL_5J7L_313
- Geometric discrepancy: 0.0375
- The information below is about IL_5J7L_313
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_17069.5
- Basepair signature
- cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9D89|1|D|U|1800
9D89|1|D|G|1801
9D89|1|D|C|1802
9D89|1|D|A|1803
9D89|1|D|A|1804
9D89|1|D|A|1805
9D89|1|D|C|1806
*
9D89|1|D|G|1815
9D89|1|D|G|1816
9D89|1|D|A|1817
9D89|1|D|C|1818
9D89|1|D|G|1819
9D89|1|D|U|1820
9D89|1|D|A|1821
9D89|1|D|U|1822
9D89|1|D|A|1823
Current chains
- Chain D
- 23S rRNA
Nearby chains
- Chain F
- 50S ribosomal protein L2
Coloring options: