IL_9D89_094

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

9D89|1|D|G|2784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D89_094 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0634

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

9D89|1|D|C|2640
9D89|1|D|U|2641
9D89|1|D|G|2642
9D89|1|D|A|2643
9D89|1|D|G|2644
*
9D89|1|D|C|2778
9D89|1|D|G|2779
9D89|1|D|A|2780
9D89|1|D|G|2781
9D89|1|D|A|2782
9D89|1|D|U|2783
9D89|1|D|G|2784
9D89|1|D|A|2785
9D89|1|D|G|2786

Current chains

Chain D

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L3

Chain i

Large ribosomal subunit protein uL13