IL_9DFE_336
3D structure
- PDB id
- 9DFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GAUG*CUAAUC
- Length
- 10 nucleotides
- Bulged bases
- 9DFE|1|2a|U|1257, 9DFE|1|2a|A|1280, 9DFE|1|2a|U|1281
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DFE_336 not in the Motif Atlas
- Homologous match to IL_6CZR_161
- Geometric discrepancy: 0.3615
- The information below is about IL_6CZR_161
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.1
- Basepair signature
- cWW-cSS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
9DFE|1|2a|G|1255
9DFE|1|2a|A|1256
9DFE|1|2a|U|1257
9DFE|1|2a|G|1258
*
9DFE|1|2a|C|1277
9DFE|1|2a|U|1278
9DFE|1|2a|A|1279
9DFE|1|2a|A|1280
9DFE|1|2a|U|1281
9DFE|1|2a|C|1282
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2c
- 30S ribosomal protein S3
- Chain 2i
- 30S ribosomal protein S9
- Chain 2j
- 30S ribosomal protein S10
- Chain 2n
- 30S ribosomal protein S14 type Z
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