IL_9DOV_108

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

9DOV|1|A1|U|2860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DOV_108 not in the Motif Atlas

Homologous match to IL_8GLP_143

Geometric discrepancy: 0.0786

The information below is about IL_8GLP_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.5

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

29

Unit IDs

9DOV|1|A1|G|2828
9DOV|1|A1|U|2829
9DOV|1|A1|G|2830
*
9DOV|1|A1|U|2858
9DOV|1|A1|U|2859
9DOV|1|A1|U|2860
9DOV|1|A1|U|2861
9DOV|1|A1|U|2862

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AI

Large ribosomal subunit protein uL16