IL_9DOV_121
3D structure
- PDB id
- 9DOV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- CUUAGUAC*GGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DOV_121 not in the Motif Atlas
- Homologous match to IL_9PN5_112
- Geometric discrepancy: 0.0896
- The information below is about IL_9PN5_112
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62879.2
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
9DOV|1|A1|C|3018
9DOV|1|A1|U|3019
9DOV|1|A1|U|3020
9DOV|1|A1|A|3021
9DOV|1|A1|G|3022
9DOV|1|A1|U|3023
9DOV|1|A1|A|3024
9DOV|1|A1|C|3025
*
9DOV|1|A1|G|3030
9DOV|1|A1|G|3031
9DOV|1|A1|A|3032
9DOV|1|A1|A|3033
9DOV|1|A1|C|3034
9DOV|1|A1|A|3035
9DOV|1|A1|G|3036
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AB
- 60S ribosomal protein L3
- Chain AH
- 60S ribosomal protein L9-A
- Chain AV
- 60S ribosomal protein L23-A
- Chain Am
- Ubiquitin-60S ribosomal protein L40
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