IL_9DOV_163

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GUA*UUUUC

Length

8 nucleotides

Bulged bases

9DOV|1|B5|U|260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DOV_163 not in the Motif Atlas

Homologous match to IL_9PN5_154

Geometric discrepancy: 0.3135

The information below is about IL_9PN5_154

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.5

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

29

Unit IDs

9DOV|1|B5|G|204
9DOV|1|B5|U|205
9DOV|1|B5|A|206
*
9DOV|1|B5|U|259
9DOV|1|B5|U|260
9DOV|1|B5|U|261
9DOV|1|B5|U|262
9DOV|1|B5|C|263

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BG

40S ribosomal protein S6-A

Chain BI

40S ribosomal protein S8-A