IL_9DOV_181

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DOV_181 not in the Motif Atlas

Homologous match to IL_9PN5_171

Geometric discrepancy: 0.0608

The information below is about IL_9PN5_171

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11411.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

14

Unit IDs

9DOV|1|B5|A|550
9DOV|1|B5|G|551
9DOV|1|B5|G|552
9DOV|1|B5|G|553
9DOV|1|B5|C|554
9DOV|1|B5|A|555
9DOV|1|B5|A|556
9DOV|1|B5|G|557
*
9DOV|1|B5|C|587
9DOV|1|B5|U|588

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BC

Small ribosomal subunit protein uS5

Chain BJ

40S ribosomal protein S9-A

Chain Be

40S ribosomal protein S30-A