IL_9DOV_223
3D structure
- PDB id
- 9DOV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- GCCAGCGA*UUGUGAAAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9DOV|1|B5|G|1480
9DOV|1|B5|C|1481
9DOV|1|B5|C|1482
9DOV|1|B5|A|1483
9DOV|1|B5|G|1484
9DOV|1|B5|C|1485
9DOV|1|B5|G|1486
9DOV|1|B5|A|1487
*
9DOV|1|B5|U|1519
9DOV|1|B5|U|1520
9DOV|1|B5|G|1521
9DOV|1|B5|U|1522
9DOV|1|B5|G|1523
9DOV|1|B5|A|1524
9DOV|1|B5|A|1525
9DOV|1|B5|A|1526
9DOV|1|B5|C|1527
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BD
- Small ribosomal subunit protein uS3
- Chain BF
- Rps5p
- Chain BQ
- 40S ribosomal protein S16-A
- Chain BT
- 40S ribosomal protein S19-A
- Chain BU
- Small ribosomal subunit protein uS10
- Chain Bd
- Small ribosomal subunit protein uS14A
Coloring options: