IL_9DOV_224

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GUCUAAC*GUAAUC

Length

13 nucleotides

Bulged bases

9DOV|1|B5|C|1490, 9DOV|1|B5|U|1491, 9DOV|1|B5|A|1516, 9DOV|1|B5|U|1517

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|B5|G|1488
9DOV|1|B5|U|1489
9DOV|1|B5|C|1490
9DOV|1|B5|U|1491
9DOV|1|B5|A|1492
9DOV|1|B5|A|1493
9DOV|1|B5|C|1494
*
9DOV|1|B5|G|1513
9DOV|1|B5|U|1514
9DOV|1|B5|A|1515
9DOV|1|B5|A|1516
9DOV|1|B5|U|1517
9DOV|1|B5|C|1518

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BD

Small ribosomal subunit protein uS3

Chain BT

40S ribosomal protein S19-A

Chain BU

Small ribosomal subunit protein uS10

Chain Bd

Small ribosomal subunit protein uS14A