IL_9E0N_007

3D structure

PDB id

9E0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis unmethylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0N_007 not in the Motif Atlas

Geometric match to IL_9DFE_007

Geometric discrepancy: 0.168

The information below is about IL_9DFE_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9E0N|1|A|U|239
9E0N|1|A|G|240
9E0N|1|A|A|241
9E0N|1|A|G|242
9E0N|1|A|U|243
9E0N|1|A|A|244
9E0N|1|A|G|245
*
9E0N|1|A|C|253
9E0N|1|A|G|254
9E0N|1|A|A|255
9E0N|1|A|A|256
9E0N|1|A|A|257
9E0N|1|A|G|258

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL35

Chain M

Large ribosomal subunit protein uL15