IL_9E0N_036

3D structure

PDB id

9E0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis unmethylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

CCG*CG

Length

5 nucleotides

Bulged bases

9E0N|1|A|C|1113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0N_036 not in the Motif Atlas

Geometric match to IL_5J7L_276

Geometric discrepancy: 0.2456

The information below is about IL_5J7L_276

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

9E0N|1|A|C|1112
9E0N|1|A|C|1113
9E0N|1|A|G|1114
*
9E0N|1|A|C|1278
9E0N|1|A|G|1279

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL30

Chain K

Large ribosomal subunit protein uL13

Chain R

Large ribosomal subunit protein bL20

Chain S

Large ribosomal subunit protein bL21