IL_9E0N_117

3D structure

PDB id

9E0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis unmethylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

GGCG*CCGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0N_117 not in the Motif Atlas

Geometric match to IL_8CRE_440

Geometric discrepancy: 0.2182

The information below is about IL_8CRE_440

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

9E0N|1|B|G|6
9E0N|1|B|G|7
9E0N|1|B|C|8
9E0N|1|B|G|9
*
9E0N|1|B|C|108
9E0N|1|B|C|109
9E0N|1|B|G|110
9E0N|1|B|C|111

Current chains

Chain B

5S rRNA

Nearby chains

Chain P

Large ribosomal subunit protein uL18

Chain X

Large ribosomal subunit protein bL27