IL_9E0P_040

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CUAAGUG*CUCAAG

Length

13 nucleotides

Bulged bases

9E0P|1|A|C|1260, 9E0P|1|A|A|1262

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0P_040 not in the Motif Atlas

Geometric match to IL_5J7L_280

Geometric discrepancy: 0.1608

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

9E0P|1|A|C|1136
9E0P|1|A|U|1137
9E0P|1|A|A|1138
9E0P|1|A|A|1139
9E0P|1|A|G|1140
9E0P|1|A|U|1141
9E0P|1|A|G|1142
*
9E0P|1|A|C|1258
9E0P|1|A|U|1259
9E0P|1|A|C|1260
9E0P|1|A|A|1261
9E0P|1|A|A|1262
9E0P|1|A|G|1263

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L36

Chain G

Large ribosomal subunit protein uL6

Chain K

Large ribosomal subunit protein uL13