IL_9E0P_149

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0P_149 not in the Motif Atlas

Geometric match to IL_8P9A_417

Geometric discrepancy: 0.2334

The information below is about IL_8P9A_417

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

9E0P|1|a|G|634
9E0P|1|a|A|635
*
9E0P|1|a|U|731
9E0P|1|a|G|732
9E0P|1|a|A|733
9E0P|1|a|C|734

Current chains

Chain a

16S rRNA

Nearby chains

Chain h

Small ribosomal subunit protein uS8

Chain o

Small ribosomal subunit protein uS15