IL_9E1S_118

3D structure

PDB id

9E1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

UGCAC*GAUAG

Length

10 nucleotides

Bulged bases

9E1S|1|I|C|2927, 9E1S|1|I|A|2928

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E1S_118 not in the Motif Atlas

Homologous match to IL_7A0S_096

Geometric discrepancy: 0.2666

The information below is about IL_7A0S_096

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

9E1S|1|I|U|2925
9E1S|1|I|G|2926
9E1S|1|I|C|2927
9E1S|1|I|A|2928
9E1S|1|I|C|2929
*
9E1S|1|I|G|2956
9E1S|1|I|A|2957
9E1S|1|I|U|2958
9E1S|1|I|A|2959
9E1S|1|I|G|2960

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17

Chain P

50S ribosomal protein L19