IL_9ED0_030
3D structure
- PDB id
- 9ED0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human LARP1 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AG(OMG)GCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9ED0_030 not in the Motif Atlas
- Geometric match to IL_8CRE_421
- Geometric discrepancy: 0.0716
- The information below is about IL_8CRE_421
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_11411.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 12
Unit IDs
9ED0|1|2|A|599
9ED0|1|2|G|600
9ED0|1|2|OMG|601
9ED0|1|2|G|602
9ED0|1|2|C|603
9ED0|1|2|A|604
9ED0|1|2|A|605
9ED0|1|2|G|606
*
9ED0|1|2|C|636
9ED0|1|2|U|637
Current chains
- Chain 2
- rRNA
Nearby chains
- Chain C
- Small ribosomal subunit protein uS5
- Chain J
- Small ribosomal subunit protein uS4
- Chain e
- Small ribosomal subunit protein eS30
- Chain h
- La-related protein 1
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