IL_9ED0_036
3D structure
- PDB id
- 9ED0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human LARP1 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9ED0_036 not in the Motif Atlas
- Geometric match to IL_8CRE_426
- Geometric discrepancy: 0.0714
- The information below is about IL_8CRE_426
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_05821.1
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
9ED0|1|2|C|676
9ED0|1|2|G|677
9ED0|1|2|U|678
9ED0|1|2|A|679
9ED0|1|2|G|680
*
9ED0|1|2|U|1025
9ED0|1|2|C|1026
9ED0|1|2|A|1027
9ED0|1|2|A|1028
9ED0|1|2|G|1029
Current chains
- Chain 2
- rRNA
Nearby chains
- Chain L
- Small ribosomal subunit protein uS17
- Chain N
- Small ribosomal subunit protein uS15
- Chain W
- Small ribosomal subunit protein uS8
- Chain X
- 40S ribosomal protein S23
Coloring options: