IL_9ED0_053
3D structure
- PDB id
- 9ED0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human LARP1 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGAGUA(PSU)G*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9ED0_053 not in the Motif Atlas
- Geometric match to IL_4LFB_034
- Geometric discrepancy: 0.0723
- The information below is about IL_4LFB_034
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_84044.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
9ED0|1|2|G|1168
9ED0|1|2|G|1169
9ED0|1|2|A|1170
9ED0|1|2|G|1171
9ED0|1|2|U|1172
9ED0|1|2|A|1173
9ED0|1|2|PSU|1174
9ED0|1|2|G|1175
*
9ED0|1|2|U|1186
9ED0|1|2|G|1187
9ED0|1|2|A|1188
9ED0|1|2|A|1189
9ED0|1|2|A|1190
9ED0|1|2|C|1191
Current chains
- Chain 2
- rRNA
Nearby chains
- Chain X
- 40S ribosomal protein S23
- Chain n
- Small ribosomal subunit protein eS32
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