IL_9ED0_060

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GACAGGA(OMU)UG*CUCGAUUC

Length

18 nucleotides

Bulged bases

9ED0|1|2|G|1285

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9ED0|1|2|G|1281
9ED0|1|2|A|1282
9ED0|1|2|C|1283
9ED0|1|2|A|1284
9ED0|1|2|G|1285
9ED0|1|2|G|1286
9ED0|1|2|A|1287
9ED0|1|2|OMU|1288
9ED0|1|2|U|1289
9ED0|1|2|G|1290
*
9ED0|1|2|C|1309
9ED0|1|2|U|1310
9ED0|1|2|C|1311
9ED0|1|2|G|1312
9ED0|1|2|A|1313
9ED0|1|2|U|1314
9ED0|1|2|U|1315
9ED0|1|2|C|1316

Current chains

Chain 2

rRNA

Nearby chains

Chain K

Small ribosomal subunit protein eS10

Chain M

Small ribosomal subunit protein eS12

Chain d

Small ribosomal subunit protein uS14

Chain f

Ubiquitin-ribosomal protein eS31 fusion protein