IL_9ED0_064
3D structure
- PDB id
- 9ED0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human LARP1 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 9ED0|1|2|C|1331, 9ED0|1|2|U|1494, 9ED0|1|2|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9ED0_064 not in the Motif Atlas
- Geometric match to IL_8P9A_439
- Geometric discrepancy: 0.1028
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
9ED0|1|2|U|1329
9ED0|1|2|G|1330
9ED0|1|2|C|1331
9ED0|1|2|A|1332
9ED0|1|2|U|1333
9ED0|1|2|G|1334
9ED0|1|2|G|1335
*
9ED0|1|2|U|1492
9ED0|1|2|C|1493
9ED0|1|2|U|1494
9ED0|1|2|G|1495
9ED0|1|2|U|1496
9ED0|1|2|G|1497
9ED0|1|2|A|1498
9ED0|1|2|U|1499
9ED0|1|2|G|1500
Current chains
- Chain 2
- rRNA
Nearby chains
- Chain D
- Small ribosomal subunit protein uS3
- Chain K
- Small ribosomal subunit protein eS10
- Chain U
- Small ribosomal subunit protein uS10
- Chain d
- Small ribosomal subunit protein uS14
- Chain h
- La-related protein 1
Coloring options: