IL_9ED0_069
3D structure
- PDB id
- 9ED0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human LARP1 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CAUGC*(OMG)AGG
- Length
- 9 nucleotides
- Bulged bases
- 9ED0|1|2|U|1397
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9ED0_069 not in the Motif Atlas
- Geometric match to IL_5EW4_002
- Geometric discrepancy: 0.318
- The information below is about IL_5EW4_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
9ED0|1|2|C|1395
9ED0|1|2|A|1396
9ED0|1|2|U|1397
9ED0|1|2|G|1398
9ED0|1|2|C|1399
*
9ED0|1|2|OMG|1447
9ED0|1|2|A|1448
9ED0|1|2|G|1449
9ED0|1|2|G|1450
Current chains
- Chain 2
- rRNA
Nearby chains
- Chain Q
- Small ribosomal subunit protein uS9
- Chain R
- Small ribosomal subunit protein eS17
- Chain U
- Small ribosomal subunit protein uS10
- Chain g
- Receptor of activated protein C kinase 1
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