IL_9F58_010

3D structure

PDB id

9F58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gcn2 dimer bound to the 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AU*AGUUGU

Length

8 nucleotides

Bulged bases

9F58|1|a|U|147

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F58_010 not in the Motif Atlas

Homologous match to IL_8P9A_236

Geometric discrepancy: 0.0801

The information below is about IL_8P9A_236

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10396.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

9F58|1|a|A|123
9F58|1|a|U|124
*
9F58|1|a|A|144
9F58|1|a|G|145
9F58|1|a|U|146
9F58|1|a|U|147
9F58|1|a|G|148
9F58|1|a|U|149

Current chains

Chain a

25S rRNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain h

60S ribosomal protein L8-A

Chain o

60S ribosomal protein L15-A