IL_9F58_040
3D structure
- PDB id
- 9F58 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Gcn2 dimer bound to the 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCGAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 9F58|1|a|G|1001
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F58_040 not in the Motif Atlas
- Homologous match to IL_8CRE_043
- Geometric discrepancy: 0.0772
- The information below is about IL_8CRE_043
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_26222.2
- Basepair signature
- cWW-cWS-cSH-tWH-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
9F58|1|a|G|999
9F58|1|a|C|1000
9F58|1|a|G|1001
9F58|1|a|A|1002
9F58|1|a|A|1003
9F58|1|a|U|1004
*
9F58|1|a|A|1046
9F58|1|a|A|1047
9F58|1|a|A|1048
9F58|1|a|C|1049
Current chains
- Chain a
- 25S rRNA
Nearby chains
- Chain H
- eIF-2-alpha kinase GCN2
- Chain b
- 5S ribosomal RNA; 5S rRNA
- Chain e
- 60S ribosomal protein L5
- Chain j
- 60S ribosomal protein L10
- Chain u
- 60S ribosomal protein L21-A
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