IL_9F58_057
3D structure
- PDB id
- 9F58 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Gcn2 dimer bound to the 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGACGAAG*UCGAA
- Length
- 13 nucleotides
- Bulged bases
- 9F58|1|a|C|1391
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F58_057 not in the Motif Atlas
- Homologous match to IL_8P9A_287
- Geometric discrepancy: 0.0672
- The information below is about IL_8P9A_287
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90775.2
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 30
Unit IDs
9F58|1|a|U|1388
9F58|1|a|G|1389
9F58|1|a|A|1390
9F58|1|a|C|1391
9F58|1|a|G|1392
9F58|1|a|A|1393
9F58|1|a|A|1394
9F58|1|a|G|1395
*
9F58|1|a|U|1415
9F58|1|a|C|1416
9F58|1|a|G|1417
9F58|1|a|A|1418
9F58|1|a|A|1419
Current chains
- Chain a
- 25S rRNA
Nearby chains
- Chain 3
- 60S ribosomal protein L4-A
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain J
- 60S ribosomal protein L26-A
- Chain Q
- 60S ribosomal protein L32
- Chain f
- 60S ribosomal protein L6-A
- Chain q
- 60S ribosomal protein L17-A
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