IL_9F58_059
3D structure
- PDB id
- 9F58 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Gcn2 dimer bound to the 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUAGUAG*CGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F58_059 not in the Motif Atlas
- Homologous match to IL_8P9A_289
- Geometric discrepancy: 0.0717
- The information below is about IL_8P9A_289
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_02666.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
9F58|1|a|G|1444
9F58|1|a|U|1445
9F58|1|a|A|1446
9F58|1|a|G|1447
9F58|1|a|U|1448
9F58|1|a|A|1449
9F58|1|a|G|1450
*
9F58|1|a|C|2354
9F58|1|a|G|2355
9F58|1|a|A|2356
9F58|1|a|A|2357
9F58|1|a|A|2358
9F58|1|a|C|2359
Current chains
- Chain a
- 25S rRNA
Nearby chains
- Chain 3
- 60S ribosomal protein L4-A
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain q
- 60S ribosomal protein L17-A
Coloring options: