IL_9F58_096
3D structure
- PDB id
- 9F58 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Gcn2 dimer bound to the 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUGAAGC*GGGU
- Length
- 11 nucleotides
- Bulged bases
- 9F58|1|a|G|2522, 9F58|1|a|G|2585, 9F58|1|a|G|2586
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F58_096 not in the Motif Atlas
- Homologous match to IL_8P9A_324
- Geometric discrepancy: 0.0944
- The information below is about IL_8P9A_324
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_52092.1
- Basepair signature
- cWW-cWS-cWW
- Number of instances in this motif group
- 4
Unit IDs
9F58|1|a|A|2520
9F58|1|a|U|2521
9F58|1|a|G|2522
9F58|1|a|A|2523
9F58|1|a|A|2524
9F58|1|a|G|2525
9F58|1|a|C|2526
*
9F58|1|a|G|2584
9F58|1|a|G|2585
9F58|1|a|G|2586
9F58|1|a|U|2587
Current chains
- Chain a
- 25S rRNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain c
- 60S ribosomal protein L2-A
- Chain h
- 60S ribosomal protein L8-A
- Chain z
- 60S ribosomal protein L25
Coloring options: