IL_9F9S_049
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUCAUCAG*CUCAAG
- Length
- 14 nucleotides
- Bulged bases
- 9F9S|1|L1|U|1191, 9F9S|1|L1|C|1192, 9F9S|1|L1|C|1316, 9F9S|1|L1|A|1318
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_049 not in the Motif Atlas
- Homologous match to IL_8C3A_054
- Geometric discrepancy: 0.0759
- The information below is about IL_8C3A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
9F9S|1|L1|C|1187
9F9S|1|L1|U|1188
9F9S|1|L1|C|1189
9F9S|1|L1|A|1190
9F9S|1|L1|U|1191
9F9S|1|L1|C|1192
9F9S|1|L1|A|1193
9F9S|1|L1|G|1194
*
9F9S|1|L1|C|1314
9F9S|1|L1|U|1315
9F9S|1|L1|C|1316
9F9S|1|L1|A|1317
9F9S|1|L1|A|1318
9F9S|1|L1|G|1319
Current chains
- Chain L1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)
Nearby chains
- Chain LD
- 60S ribosomal protein L9-A
- Chain LH
- 60S ribosomal protein L14-A
- Chain LJ
- 60S ribosomal protein L16-A
- Chain LN
- 60S ribosomal protein L20-A
- Chain Le
- Ubiquitin-60S ribosomal protein L40
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