IL_9F9S_058

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_058 not in the Motif Atlas

Homologous match to IL_8P9A_289

Geometric discrepancy: 0.0732

The information below is about IL_8P9A_289

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9F9S|1|L1|G|1444
9F9S|1|L1|U|1445
9F9S|1|L1|A|1446
9F9S|1|L1|G|1447
9F9S|1|L1|U|1448
9F9S|1|L1|A|1449
9F9S|1|L1|G|1450
*
9F9S|1|L1|C|2354
9F9S|1|L1|G|2355
9F9S|1|L1|A|2356
9F9S|1|L1|A|2357
9F9S|1|L1|A|2358
9F9S|1|L1|C|2359

Current chains

Chain L1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)

Nearby chains

Chain L2

5.8S ribosomal RNA; 5.8S rRNA

Chain LK

60S ribosomal protein L17-A

Chain Ly

60S ribosomal protein L4-A