IL_9F9S_059

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCAAC*GGA

Length

8 nucleotides

Bulged bases

9F9S|1|L1|G|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_059 not in the Motif Atlas

Homologous match to IL_8C3A_482

Geometric discrepancy: 0.0954

The information below is about IL_8C3A_482

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_04395.1

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

3

Unit IDs

9F9S|1|L1|U|1501
9F9S|1|L1|C|1502
9F9S|1|L1|A|1503
9F9S|1|L1|A|1504
9F9S|1|L1|C|1505
*
9F9S|1|L1|G|1513
9F9S|1|L1|G|1514
9F9S|1|L1|A|1515

Current chains

Chain L1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)

Nearby chains

Chain LK

60S ribosomal protein L17-A

Chain LM

60S ribosomal protein L19-A

Chain Lf

60S ribosomal protein L39