IL_9F9S_065

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCUUC*GGAAUA

Length

11 nucleotides

Bulged bases

9F9S|1|L1|U|1629, 9F9S|1|L1|U|1815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_065 not in the Motif Atlas

Homologous match to IL_8C3A_072

Geometric discrepancy: 0.1799

The information below is about IL_8C3A_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48431.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

9F9S|1|L1|U|1627
9F9S|1|L1|C|1628
9F9S|1|L1|U|1629
9F9S|1|L1|U|1630
9F9S|1|L1|C|1631
*
9F9S|1|L1|G|1811
9F9S|1|L1|G|1812
9F9S|1|L1|A|1813
9F9S|1|L1|A|1814
9F9S|1|L1|U|1815
9F9S|1|L1|A|1816

Current chains

Chain L1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)

Nearby chains

Chain Lr

60S ribosomal protein L27-A