IL_9F9S_066

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAU*AGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_066 not in the Motif Atlas

Homologous match to IL_8C3A_073

Geometric discrepancy: 0.1108

The information below is about IL_8C3A_073

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

9F9S|1|L1|U|1645
9F9S|1|L1|G|1646
9F9S|1|L1|A|1647
9F9S|1|L1|A|1648
9F9S|1|L1|U|1649
*
9F9S|1|L1|A|1806
9F9S|1|L1|G|1807
9F9S|1|L1|G|1808
9F9S|1|L1|A|1809
9F9S|1|L1|A|1810

Current chains

Chain L1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)

Nearby chains

Chain Lk

60S ribosomal protein L34-A

Chain Lr

60S ribosomal protein L27-A

Chain Lw

60S ribosomal protein L2-A