IL_9F9S_082
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAUGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 9F9S|1|L1|U|2159, 9F9S|1|L1|U|2175, 9F9S|1|L1|C|2179
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_082 not in the Motif Atlas
- Homologous match to IL_8C3A_088
- Geometric discrepancy: 0.0863
- The information below is about IL_8C3A_088
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_64509.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
9F9S|1|L1|C|2156
9F9S|1|L1|G|2157
9F9S|1|L1|A|2158
9F9S|1|L1|U|2159
9F9S|1|L1|G|2160
9F9S|1|L1|G|2161
*
9F9S|1|L1|U|2173
9F9S|1|L1|G|2174
9F9S|1|L1|U|2175
9F9S|1|L1|U|2176
9F9S|1|L1|G|2177
9F9S|1|L1|A|2178
9F9S|1|L1|C|2179
9F9S|1|L1|G|2180
Current chains
- Chain L1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)
Nearby chains
- Chain Lb
- 60S ribosomal protein L43-A
- Chain Lw
- 60S ribosomal protein L2-A
- Chain S1
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: