IL_9F9S_097
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUGA*UACA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_097 not in the Motif Atlas
- Homologous match to IL_8P9A_327
- Geometric discrepancy: 0.1029
- The information below is about IL_8P9A_327
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
9F9S|1|L1|U|2718
9F9S|1|L1|U|2719
9F9S|1|L1|G|2720
9F9S|1|L1|A|2721
*
9F9S|1|L1|U|2735
9F9S|1|L1|A|2736
9F9S|1|L1|C|2737
9F9S|1|L1|A|2738
Current chains
- Chain L1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)
Nearby chains
- Chain LL
- 60S ribosomal protein L18-A
- Chain LO
- 60S ribosomal protein L21-A
- Chain Lc
- 60S ribosomal protein L42-A
- Chain Lp
- 60S ribosomal protein L29
- Chain Lz
- 60S ribosomal protein L5
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