IL_9F9S_115
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUUUUG*CGAAG
- Length
- 11 nucleotides
- Bulged bases
- 9F9S|1|L1|U|3056, 9F9S|1|L1|U|3058
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_115 not in the Motif Atlas
- Homologous match to IL_8P9A_346
- Geometric discrepancy: 0.0744
- The information below is about IL_8P9A_346
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_98200.1
- Basepair signature
- cWW-L-R-tHW-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
9F9S|1|L1|U|3054
9F9S|1|L1|U|3055
9F9S|1|L1|U|3056
9F9S|1|L1|U|3057
9F9S|1|L1|U|3058
9F9S|1|L1|G|3059
*
9F9S|1|L1|C|3084
9F9S|1|L1|G|3085
9F9S|1|L1|A|3086
9F9S|1|L1|A|3087
9F9S|1|L1|G|3088
Current chains
- Chain L1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)
Nearby chains
- Chain Ln
- 60S ribosomal protein L31-A
- Chain Lu
- 60S ribosomal protein L24-A
- Chain Lx
- 60S ribosomal protein L3
Coloring options: