IL_9F9S_197

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

9F9S|1|M1|A|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_197 not in the Motif Atlas

Homologous match to IL_8C3A_057

Geometric discrepancy: 0.2124

The information below is about IL_8C3A_057

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

9F9S|1|M1|U|1218
9F9S|1|M1|C|1219
9F9S|1|M1|U|1220
9F9S|1|M1|A|1221
9F9S|1|M1|G|1222
9F9S|1|M1|A|1223
9F9S|1|M1|C|1224
9F9S|1|M1|A|1225
9F9S|1|M1|G|1226
*
9F9S|1|M1|C|1283
9F9S|1|M1|C|1284
9F9S|1|M1|G|1285
9F9S|1|M1|A|1286
9F9S|1|M1|A|1287

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain MN

60S ribosomal protein L20-A

Chain MQ

60S acidic ribosomal protein P0

Chain Me

Ubiquitin-60S ribosomal protein L40