IL_9F9S_202
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGACGAAG*UCGAA
- Length
- 13 nucleotides
- Bulged bases
- 9F9S|1|M1|C|1391
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_202 not in the Motif Atlas
- Homologous match to IL_8P9A_287
- Geometric discrepancy: 0.0565
- The information below is about IL_8P9A_287
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90775.1
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 23
Unit IDs
9F9S|1|M1|U|1388
9F9S|1|M1|G|1389
9F9S|1|M1|A|1390
9F9S|1|M1|C|1391
9F9S|1|M1|G|1392
9F9S|1|M1|A|1393
9F9S|1|M1|A|1394
9F9S|1|M1|G|1395
*
9F9S|1|M1|U|1415
9F9S|1|M1|C|1416
9F9S|1|M1|G|1417
9F9S|1|M1|A|1418
9F9S|1|M1|A|1419
Current chains
- Chain M1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications
Nearby chains
- Chain M2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain MA
- 60S ribosomal protein L6-A
- Chain MK
- 60S ribosomal protein L17-A
- Chain Mm
- 60S ribosomal protein L32
- Chain Ms
- 60S ribosomal protein L26-A
- Chain My
- 60S ribosomal protein L4-A
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